radC protein (Lactobacillus oris) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

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textmining

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protein homology

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Score

radC

DNA repair protein RadC; Identified by match to protein family HMM PF04002. (205 aa)

Predicted Functional Partners:

folC

0.943

mreC

0.908

mreB

0.901

valS

0.878

radA

0.845

EGS39021.1

0.843

polA

0.800

EGS38597.1

0.786

recU

0.765

EGS36093.1

0.742

Your Current Organism:

Lactobacillus oris

NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGS36093.1	EGS39021.1	HMPREF9102_1128	HMPREF9102_0046	comF family protein.	Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.	0.497
EGS36093.1	radC	HMPREF9102_1128	HMPREF9102_0058	comF family protein.	DNA repair protein RadC; Identified by match to protein family HMM PF04002.	0.742
EGS38597.1	EGS39021.1	HMPREF9102_1655	HMPREF9102_0046	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.	Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.	0.528
EGS38597.1	folC	HMPREF9102_1655	HMPREF9102_0059	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.	Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499.	0.758
EGS38597.1	mreC	HMPREF9102_1655	HMPREF9102_0056	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.	Rod shape-determining protein MreC; Identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219.	0.485
EGS38597.1	polA	HMPREF9102_1655	HMPREF9102_0905	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.	DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.999
EGS38597.1	radC	HMPREF9102_1655	HMPREF9102_0058	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.	DNA repair protein RadC; Identified by match to protein family HMM PF04002.	0.786
EGS38597.1	valS	HMPREF9102_1655	HMPREF9102_0060	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.	valine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422.	0.938
EGS39021.1	EGS36093.1	HMPREF9102_0046	HMPREF9102_1128	Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.	comF family protein.	0.497
EGS39021.1	EGS38597.1	HMPREF9102_0046	HMPREF9102_1655	Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.	0.528
EGS39021.1	polA	HMPREF9102_0046	HMPREF9102_0905	Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.	DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.920
EGS39021.1	radA	HMPREF9102_0046	HMPREF9102_1190	Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.	DNA repair protein RadA; Identified by match to protein family HMM TIGR00416.	0.501
EGS39021.1	radC	HMPREF9102_0046	HMPREF9102_0058	Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.	DNA repair protein RadC; Identified by match to protein family HMM PF04002.	0.843
folC	EGS38597.1	HMPREF9102_0059	HMPREF9102_1655	Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499.	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.	0.758
folC	mreB	HMPREF9102_0059	HMPREF9102_0057	Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499.	Rod shape-determining protein MreB; Identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904.	0.852
folC	mreC	HMPREF9102_0059	HMPREF9102_0056	Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499.	Rod shape-determining protein MreC; Identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219.	0.573
folC	radC	HMPREF9102_0059	HMPREF9102_0058	Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499.	DNA repair protein RadC; Identified by match to protein family HMM PF04002.	0.943
folC	valS	HMPREF9102_0059	HMPREF9102_0060	Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499.	valine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422.	0.947
mreB	folC	HMPREF9102_0057	HMPREF9102_0059	Rod shape-determining protein MreB; Identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904.	Bifunctional protein FolC; Identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499.	0.852
mreB	mreC	HMPREF9102_0057	HMPREF9102_0056	Rod shape-determining protein MreB; Identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904.	Rod shape-determining protein MreC; Identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219.	0.992