STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37885.1CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. (210 aa)    
Predicted Functional Partners:
EGS37872.1
Hypothetical protein.
       0.656
EGS37880.1
Hypothetical protein.
 
     0.593
rbsK
Ribokinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152.
       0.497
EGS37862.1
Sugar-binding domain protein; Identified by match to protein family HMM PF00356; match to protein family HMM PF00532.
       0.441
EGS38129.1
Hypothetical protein.
  
     0.436
EGS36395.1
KxYKxGKxW signal domain protein; Identified by match to protein family HMM TIGR03715.
    
   0.429
EGS36492.1
KxYKxGKxW signal domain protein; Identified by match to protein family HMM TIGR03715.
    
   0.429
EGS36112.1
KxYKxGKxW signal domain protein; Identified by match to protein family HMM TIGR03715.
    
   0.429
EGS39021.1
Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.
       0.426
EGS39465.1
Identified by match to protein family HMM PF00881.
  
  
 0.426
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.