STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37878.1Dipeptidase PepV; Identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887. (466 aa)    
Predicted Functional Partners:
pepN
Membrane alanyl aminopeptidase; Identified by match to protein family HMM PF01433.
   
 
 0.840
map
Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.
  
  
 0.817
pepT
Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01882.
     
 0.811
EGS36986.1
Putative Xaa-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM PF09168.
     
 0.803
pepO
Neprilysin; Identified by match to protein family HMM PF01431; match to protein family HMM PF05649.
      
 0.800
EGS37882.1
Universal stress family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
  
 0.740
EGS37861.1
Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
  
 0.740
EGS37893.1
YjeF C-terminal domain protein; Identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196.
       0.734
glmS
Glutamine-fructose-6-phosphate transaminase (isomerizing); Identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135.
   
 0.645
pepQ
Xaa-Pro dipeptidase; Identified by match to protein family HMM PF00557; match to protein family HMM PF01321.
 
 
 
 0.590
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.