STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37891.1LysM domain protein; Identified by match to protein family HMM PF01476. (220 aa)    
Predicted Functional Partners:
topA
DNA topoisomerase I; Identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051.
       0.800
EGS36489.1
Peptidase, M23 family; Identified by match to protein family HMM PF01551.
  
  
 0.568
EGS36771.1
Peptidase, M23 family; Identified by match to protein family HMM PF01551.
  
  
 0.568
EGS38024.1
Tape measure domain protein; Identified by match to protein family HMM TIGR02675.
  
  
 0.565
EGS38938.1
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
 
 
   0.522
mreD
Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426.
  
     0.496
ltaS-2
Glycerol phosphate lipoteichoic acid synthase 1; Identified by match to protein family HMM PF00884.
  
   
 0.479
EGS39468.1
Putative molybdenum cofactor biosynthesis protein C; Identified by match to protein family HMM TIGR01167.
   
 
 0.452
EGS36076.1
Hypothetical protein.
   
 
 0.452
EGS35823.1
Hypothetical protein.
   
 
 0.452
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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