STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36393.1Aspartate racemase; Identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035. (239 aa)    
Predicted Functional Partners:
asnB
Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
 
  
 0.972
EGS36440.1
Hypothetical protein.
 
     0.966
pyrB
Aspartate carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670.
    
 0.964
EGS36776.1
L-asparaginase, type I; Identified by match to protein family HMM PF00710; match to protein family HMM TIGR00519.
    
 0.913
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085.
 
   
 0.912
aspD
Aspartate 4-decarboxylase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03801.
    
  0.901
asnA
Aspartate--ammonia ligase; Identified by match to protein family HMM PF03590; match to protein family HMM TIGR00669.
     
  0.900
purA
Adenylosuccinate synthase; Identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184.
    
  0.900
EGS38011.1
Amino acid kinase family; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00657.
     
  0.800
EGS36408.1
Putative aspartate-alanine antiporter; Identified by match to protein family HMM PF06826; match to protein family HMM TIGR01625.
 
     0.744
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.