STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36472.1N-6 DNA Methylase; Identified by match to protein family HMM PF02384. (484 aa)    
Predicted Functional Partners:
EGS36426.1
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
 0.999
EGS36398.1
Helicase C-terminal domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.
 
 0.982
EGS36388.1
Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
 0.980
EGS37337.1
Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF04851.
 
   
 0.889
EGS38597.1
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.
     
 0.635
uvrB
Excinuclease ABC, B subunit; Identified by match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM PF04851; match to protein family HMM TIGR00631.
   
 0.593
EGS36401.1
Hypothetical protein.
       0.562
EGS35851.1
Restriction endonuclease; Identified by match to protein family HMM PF04471.
  
  
 0.549
EGS36403.1
Hypothetical protein.
       0.531
atpF
ATP synthase F0, B subunit; Identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144.
  
 0.528
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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