STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36442.1Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730. (191 aa)    
Predicted Functional Partners:
prmC
protein-(glutamine-N5) methyltransferase, release factor-specific; Identified by match to protein family HMM PF05175; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534.
      0.840
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
       0.800
ribD
Riboflavin biosynthesis protein RibD; Identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00326.
       0.800
EGS36496.1
Putative L-2-hydroxyisocaproate dehydrogenase; Identified by match to protein family HMM PF00056; match to protein family HMM PF02866.
       0.785
EGS36429.1
Putative glutamate-cysteine ligase.
       0.479
EGS35777.1
Ribonucleoside-diphosphate reductase, beta subunit; Identified by match to protein family HMM PF00268.
  
    0.454
EGS35859.1
Ribonucleoside-diphosphate reductase, alpha subunit; Identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF08343; match to protein family HMM TIGR02506.
  
    0.447
miaA
tRNA dimethylallyltransferase; Identified by match to protein family HMM PF01715; match to protein family HMM TIGR00174.
     
 0.431
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.