Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EGS36060.1 | EGS36469.1 | HMPREF9102_1109 | HMPREF9102_0224 | Identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826. | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | 0.469 |
| EGS36060.1 | EGS37998.1 | HMPREF9102_1109 | HMPREF9102_0309 | Identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826. | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | 0.532 |
| EGS36387.1 | EGS36469.1 | HMPREF9102_0199 | HMPREF9102_0224 | Chain length determinant protein; Identified by match to protein family HMM PF02706. | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | 0.530 |
| EGS36387.1 | EGS37865.1 | HMPREF9102_0199 | HMPREF9102_0080 | Chain length determinant protein; Identified by match to protein family HMM PF02706. | Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943. | 0.467 |
| EGS36387.1 | EGS37880.1 | HMPREF9102_0199 | HMPREF9102_0072 | Chain length determinant protein; Identified by match to protein family HMM PF02706. | Hypothetical protein. | 0.620 |
| EGS36465.1 | EGS36469.1 | HMPREF9102_0226 | HMPREF9102_0224 | Arylsulfatase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00884. | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | 0.577 |
| EGS36465.1 | EGS36488.1 | HMPREF9102_0226 | HMPREF9102_0225 | Arylsulfatase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00884. | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.994 |
| EGS36469.1 | EGS36060.1 | HMPREF9102_0224 | HMPREF9102_1109 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826. | 0.469 |
| EGS36469.1 | EGS36387.1 | HMPREF9102_0224 | HMPREF9102_0199 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Chain length determinant protein; Identified by match to protein family HMM PF02706. | 0.530 |
| EGS36469.1 | EGS36465.1 | HMPREF9102_0224 | HMPREF9102_0226 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Arylsulfatase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00884. | 0.577 |
| EGS36469.1 | EGS36488.1 | HMPREF9102_0224 | HMPREF9102_0225 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.580 |
| EGS36469.1 | EGS36983.1 | HMPREF9102_0224 | HMPREF9102_1835 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Hypothetical protein. | 0.509 |
| EGS36469.1 | EGS37053.1 | HMPREF9102_0224 | HMPREF9102_1770 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Hypothetical protein. | 0.513 |
| EGS36469.1 | EGS37865.1 | HMPREF9102_0224 | HMPREF9102_0080 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943. | 0.537 |
| EGS36469.1 | EGS37880.1 | HMPREF9102_0224 | HMPREF9102_0072 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Hypothetical protein. | 0.605 |
| EGS36469.1 | EGS37998.1 | HMPREF9102_0224 | HMPREF9102_0309 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | 0.479 |
| EGS36469.1 | sepF | HMPREF9102_0224 | HMPREF9102_0317 | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | Cell division protein SepF; Identified by match to protein family HMM PF04472. | 0.576 |
| EGS36488.1 | EGS36465.1 | HMPREF9102_0225 | HMPREF9102_0226 | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Arylsulfatase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00884. | 0.994 |
| EGS36488.1 | EGS36469.1 | HMPREF9102_0225 | HMPREF9102_0224 | Putative membrane protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | 0.580 |
| EGS36983.1 | EGS36469.1 | HMPREF9102_1835 | HMPREF9102_0224 | Hypothetical protein. | Putative biofilm regulatory protein A; Identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350. | 0.509 |
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