STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prfCPeptide chain release factor 3; Identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503. (526 aa)    
Predicted Functional Partners:
rplS
Ribosomal protein L19; Identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024.
  
   0.999
rpmA
Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062.
   
 
 0.999
rplU
Ribosomal protein L21; Identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061.
   
   0.999
rpmG
Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023.
   
   0.999
rpmF
Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031.
  
   0.999
rplT
Ribosomal protein L20; Identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032.
  
 
 0.999
rplL
Ribosomal protein L7/L12; Identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855.
   
 
 0.999
rplQ
Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.
  
   0.999
rplI
Ribosomal protein L9; Identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158.
   
   0.999
prfB
Peptide chain release factor 2; Identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020.
  
 
 0.887
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.