STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38028.1RelA/SpoT domain protein; Identified by match to protein family HMM PF04607. (223 aa)    
Predicted Functional Partners:
EGS38105.1
NAD(+)/NADH kinase; Identified by match to protein family HMM PF01513.
  
    0.940
EGS38127.1
Pseudouridine synthase, RluA family; Identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005.
       0.917
relA
GTP diphosphokinase; Identified by match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691.
    
 0.917
EGS36789.1
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
  
  
 
0.917
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064.
     
  0.900
EGS36051.1
Putative exopolyphosphatase; Identified by match to protein family HMM PF02541.
     
  0.900
EGS35766.1
Hypothetical protein.
     
  0.900
EGS37438.1
Putative exopolyphosphatase; Identified by match to protein family HMM PF02541.
     
  0.900
ndkA
Nucleoside pyrophosphate kinase; Identified by match to protein family HMM PF00334.
    
  0.900
EGS37004.1
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
    
  0.900
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.