STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38105.1NAD(+)/NADH kinase; Identified by match to protein family HMM PF01513. (271 aa)    
Predicted Functional Partners:
nadE
NAD+ synthase; Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552.
    
 0.942
EGS38028.1
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
  
    0.940
EGS37328.1
Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146.
  
 
 0.924
EGS38127.1
Pseudouridine synthase, RluA family; Identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005.
  
  
 0.922
EGS37960.1
Hypothetical protein.
       0.883
EGS39021.1
Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.
  
    0.809
EGS36329.1
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
       0.656
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
 
  
  0.628
EGS35850.1
NAD(P)(+) transhydrogenase (AB-specific), alpha-2 subunit family protein.
     
 0.579
EGS35936.1
Putative NAD(P)(+) transhydrogenase (AB-specific), alpha subunit; Identified by match to protein family HMM PF01262; match to protein family HMM PF05222.
     
 0.579
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.