STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38127.1Pseudouridine synthase, RluA family; Identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005. (297 aa)    
Predicted Functional Partners:
EGS38105.1
NAD(+)/NADH kinase; Identified by match to protein family HMM PF01513.
  
  
 0.922
EGS38028.1
RelA/SpoT domain protein; Identified by match to protein family HMM PF04607.
       0.917
EGS37960.1
Hypothetical protein.
       0.865
cgtA
Obg family GTPase CgtA; Identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM PF09269; match to protein family HMM TIGR00231; match to protein family HMM TIGR02729; match to protein family HMM TIGR03595.
 
 
 
 0.735
rplT
Ribosomal protein L20; Identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032.
 
 
 0.597
hflB
ATP-dependent metallopeptidase HflB; Identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241.
 
    0.597
EGS36052.1
RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186.
 
 
 0.567
EGS36582.1
RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032.
 
 
 0.547
rplM
Ribosomal protein L13; Identified by match to protein family HMM PF00572; match to protein family HMM TIGR01066.
 
   0.544
rplB
Ribosomal protein L2; Identified by match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171.
 
   0.527
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.