STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38177.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
EGS37989.1
Hypothetical protein; Identified by glimmer; putative.
       0.572
EGS37915.1
Hypothetical protein.
       0.544
mraZ
Protein MraZ; Identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242.
       0.486
mraW
S-adenosyl-methyltransferase MraW; Identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006.
       0.465
ftsL
Cell division protein FtsL; Identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209.
       0.432
EGS37998.1
Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
       0.432
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; Identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445.
       0.413
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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