Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EGS37936.1 | EGS37998.1 | HMPREF9102_0311 | HMPREF9102_0309 | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | 0.967 |
| EGS37936.1 | EGS38019.1 | HMPREF9102_0311 | HMPREF9102_0314 | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | 0.897 |
| EGS37936.1 | ftsA | HMPREF9102_0311 | HMPREF9102_0315 | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | Cell division protein FtsA; Identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174. | 0.794 |
| EGS37936.1 | ftsL | HMPREF9102_0311 | HMPREF9102_0308 | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | Cell division protein FtsL; Identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209. | 0.743 |
| EGS37936.1 | ftsZ | HMPREF9102_0311 | HMPREF9102_0316 | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | Cell division protein FtsZ; Identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065. | 0.618 |
| EGS37936.1 | mraW | HMPREF9102_0311 | HMPREF9102_0307 | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | S-adenosyl-methyltransferase MraW; Identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006. | 0.784 |
| EGS37936.1 | mraY | HMPREF9102_0311 | HMPREF9102_0310 | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | phospho-N-acetylmuramoyl-pentapeptide- transferase; Identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445. | 0.978 |
| EGS37936.1 | mraZ | HMPREF9102_0311 | HMPREF9102_0306 | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | Protein MraZ; Identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242. | 0.753 |
| EGS37936.1 | murG | HMPREF9102_0311 | HMPREF9102_0313 | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Identified by match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133. | 0.981 |
| EGS37998.1 | EGS37936.1 | HMPREF9102_0309 | HMPREF9102_0311 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | 0.967 |
| EGS37998.1 | EGS38019.1 | HMPREF9102_0309 | HMPREF9102_0314 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | 0.961 |
| EGS37998.1 | EGS38584.1 | HMPREF9102_0309 | HMPREF9102_1542 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Septum formation initiator; Identified by match to protein family HMM PF04977. | 0.752 |
| EGS37998.1 | ftsA | HMPREF9102_0309 | HMPREF9102_0315 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Cell division protein FtsA; Identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174. | 0.936 |
| EGS37998.1 | ftsL | HMPREF9102_0309 | HMPREF9102_0308 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Cell division protein FtsL; Identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209. | 0.944 |
| EGS37998.1 | ftsZ | HMPREF9102_0309 | HMPREF9102_0316 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Cell division protein FtsZ; Identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065. | 0.864 |
| EGS37998.1 | mraW | HMPREF9102_0309 | HMPREF9102_0307 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | S-adenosyl-methyltransferase MraW; Identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006. | 0.931 |
| EGS37998.1 | mraY | HMPREF9102_0309 | HMPREF9102_0310 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | phospho-N-acetylmuramoyl-pentapeptide- transferase; Identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445. | 0.978 |
| EGS37998.1 | mraZ | HMPREF9102_0309 | HMPREF9102_0306 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Protein MraZ; Identified by match to protein family HMM PF02381; match to protein family HMM TIGR00242. | 0.920 |
| EGS37998.1 | murG | HMPREF9102_0309 | HMPREF9102_0313 | Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Identified by match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133. | 0.925 |
| EGS38019.1 | EGS37936.1 | HMPREF9102_0314 | HMPREF9102_0311 | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. | 0.897 |
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