STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mraYphospho-N-acetylmuramoyl-pentapeptide- transferase; Identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445. (318 aa)    
Predicted Functional Partners:
murG
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Identified by match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133.
 
 
 0.998
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143.
 
 0.995
EGS37998.1
Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
  
 0.978
EGS37936.1
Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245.
 
  
 0.978
murD
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02875.
 
  
 0.973
EGS38019.1
Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478.
  
  
 0.936
mraW
S-adenosyl-methyltransferase MraW; Identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006.
  
  
 0.935
ftsL
Cell division protein FtsL; Identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209.
  
  
 0.923
ftsZ
Cell division protein FtsZ; Identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065.
 
  
 0.919
murC
UDP-N-acetylmuramate--L-alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082.
 
  
 0.916
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.