STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37936.1Mur ligase middle domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08245. (208 aa)    
Predicted Functional Partners:
murD
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02875.
     0.991
murG
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Identified by match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133.
 
  
 0.981
murC
UDP-N-acetylmuramate--L-alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082.
  
 0.979
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; Identified by match to protein family HMM PF00953; match to protein family HMM TIGR00445.
 
  
 0.978
EGS37998.1
Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
 
  
 0.967
murB
UDP-N-acetylmuramate dehydrogenase; Identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179.
   
 0.937
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143.
 
  
 0.932
EGS38019.1
Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478.
  
  
 0.897
murA-2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072.
 
   
 0.861
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Identified by match to protein family HMM PF00275; match to protein family HMM TIGR01072.
 
   
 0.817
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.