STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmUtRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Identified by match to protein family HMM PF01171; match to protein family HMM PF03054; match to protein family HMM TIGR00420. (377 aa)    
Predicted Functional Partners:
EGS38114.1
Putative cysteine desulfurase; Identified by match to protein family HMM PF00266.
  
 
 0.937
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Identified by match to protein family HMM PF02568; match to protein family HMM PF02926; match to protein family HMM PF06508; match to protein family HMM TIGR00342.
 
 
 0.885
EGS38104.1
Identified by match to protein family HMM PF08866.
       0.882
EGS37937.1
Identified by match to protein family HMM PF00300.
  
    0.878
mtnN
MTA/SAH nucleosidase; Identified by match to protein family HMM PF01048; match to protein family HMM TIGR01704.
       0.875
EGS38093.1
Helicase, RecD/TraA family; Identified by match to protein family HMM TIGR01448.
  
    0.873
EGS37988.1
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
       0.867
EGS39021.1
Competence/damage-inducible protein CinA N-terminal domain protein; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200.
  
    0.843
EGS35812.1
D-ala D-ala ligase N-terminal domain protein; Identified by match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205.
  
  
 0.817
rpmA
Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062.
  
  
 0.810
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.