STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38011.1Amino acid kinase family; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00657. (452 aa)    
Predicted Functional Partners:
asd
Aspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR00978.
  
 
 0.989
dapF
Diaminopimelate epimerase; Identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652.
 
  
 0.983
lysA
Diaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048.
   
 0.958
dapB
Dihydrodipicolinate reductase; Identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036.
 
  
 0.937
EGS39425.1
Homoserine O-succinyltransferase; Identified by match to protein family HMM PF04204.
 
  
 0.916
asnB
Asparagine synthase (glutamine-hydrolyzing); Identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536.
  
 
 0.900
dapA
Dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674.
 
  
 0.854
aspD
Aspartate 4-decarboxylase; Identified by match to protein family HMM PF00155; match to protein family HMM TIGR03801.
  
 0.854
purA
Adenylosuccinate synthase; Identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184.
  
 
  0.836
EGS36776.1
L-asparaginase, type I; Identified by match to protein family HMM PF00710; match to protein family HMM TIGR00519.
    
 0.811
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.