STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysADiaminopimelate decarboxylase; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048. (438 aa)    
Predicted Functional Partners:
dapB
Dihydrodipicolinate reductase; Identified by match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036.
 
  
 0.999
dapF
Diaminopimelate epimerase; Identified by match to protein family HMM PF01678; match to protein family HMM TIGR00652.
 
 0.998
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase; Identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532.
 
  
 0.993
dapA
Dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674.
  
 0.981
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143.
     
 0.970
EGS38011.1
Amino acid kinase family; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR00657.
   
 0.958
EGS38100.1
Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891.
 
   
 0.942
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
 
   
 0.895
EGS35817.1
Identified by match to protein family HMM PF02525.
    
  0.892
asd
Aspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR00978.
  
  
 0.872
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.