STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37919.1Phage terminase, small subunit, P27 family; Identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558. (151 aa)    
Predicted Functional Partners:
EGS38124.1
Putative phage terminase, large subunit; Identified by match to protein family HMM PF03354.
 
    0.984
EGS38159.1
Phage portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
 
  
 0.974
EGS38032.1
Phage major capsid protein, HK97 family; Identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554.
 
   
 0.951
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Identified by match to protein family HMM PF00574.
 
    0.948
EGS38030.1
HNH endonuclease domain protein; Identified by match to protein family HMM PF01844.
 
    0.937
EGS37948.1
Phage protein, HK97 gp10 family; Identified by match to protein family HMM PF04883; match to protein family HMM PF07772; match to protein family HMM TIGR01725.
 
     0.895
EGS37967.1
Putative phage major tail protein.
 
     0.895
EGS38024.1
Tape measure domain protein; Identified by match to protein family HMM TIGR02675.
 
     0.889
EGS38049.1
Putative phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF06997.
 
     0.811
EGS38062.1
Putative lipoprotein; Identified by match to protein family HMM PF06341.
       0.718
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.