STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38101.1Glycosyl hydrolase family 25; Identified by match to protein family HMM PF01183. (476 aa)    
Predicted Functional Partners:
EGS38033.1
Hypothetical protein.
      0.777
EGS38076.1
Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF04650; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.750
EGS39500.1
LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF06458; match to protein family HMM PF08363; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
   
 0.742
EGS38607.1
Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF04650; match to protein family HMM PF06458; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.735
EGS37411.1
LPXTG-motif cell wall anchor domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167.
 
     0.731
EGS36613.1
LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF06458; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
 
     0.689
EGS36474.1
Conserved domain protein.
  
     0.688
EGS36406.1
Hypothetical protein.
 
     0.688
EGS39413.1
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
 
     0.677
EGS38784.1
LPXTG-motif cell wall anchor domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00746; match to protein family HMM PF08428; match to protein family HMM TIGR01167; match to protein family HMM TIGR02331.
  
     0.644
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.