STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37953.1Identified by match to protein family HMM PF05979. (83 aa)    
Predicted Functional Partners:
EGS38037.1
Identified by match to protein family HMM PF03672.
 
    0.938
lexA
Repressor LexA; Identified by match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498.
  
  
 0.892
EGS37941.1
Identified by match to protein family HMM PF05256.
  
     0.571
EGS38985.1
Identified by match to protein family HMM PF06949.
  
   
 0.473
spxA
Transcriptional regulator Spx; Identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617.
  
     0.468
EGS37829.1
Identified by match to protein family HMM PF02620.
  
     0.427
recX
Regulatory protein RecX; Identified by match to protein family HMM PF02631.
  
     0.415
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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