STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsfTranslation elongation factor Ts; Identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116. (291 aa)    
Predicted Functional Partners:
tuf
Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00485.
  
 0.999
rpsB
Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011.
 
 
 0.999
frr
Ribosome recycling factor; Identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496.
 
 
 0.999
pyrH
UMP kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075.
  
 0.998
rpsR
Ribosomal protein S18; Identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165.
  
  
 0.989
rpsJ
Ribosomal protein S10; Identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049.
  
  
 0.982
rimM
16S rRNA processing protein RimM; Identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273.
  
  
 0.976
rplB
Ribosomal protein L2; Identified by match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171.
  
  
 0.974
tig
Trigger factor; Identified by match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115.
 
 
 0.972
rplD
50S ribosomal protein L4; Identified by match to protein family HMM PF00573; match to protein family HMM TIGR03953.
 
  
 0.970
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.