STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrHUMP kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075. (240 aa)    
Predicted Functional Partners:
frr
Ribosome recycling factor; Identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496.
  
 0.999
tsf
Translation elongation factor Ts; Identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116.
  
 0.998
rpsB
Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011.
 
  
 0.990
topA
DNA topoisomerase I; Identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051.
     
 0.958
upp
Uracil phosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR01091.
   
 
 0.958
uppS
Di-trans,poly-cis-decaprenylcistransferase; Identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055.
  
  
 0.952
ndkA
Nucleoside pyrophosphate kinase; Identified by match to protein family HMM PF00334.
  
 
 0.944
cdsA
Phosphatidate cytidylyltransferase; Identified by match to protein family HMM PF01148.
 
  
 0.928
rseP
RIP metalloprotease RseP; Identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054.
  
  
 0.917
pyrR-2
Pyrimidine operon regulatory protein/uracil phosphoribosyltransferase PyrR; Identified by match to protein family HMM PF00156.
     
 0.915
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.