STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaJChaperone protein DnaJ; Identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349. (385 aa)    
Predicted Functional Partners:
ysxC
Ribosome biogenesis GTP-binding protein YsxC; Identified by match to protein family HMM PF01926; match to protein family HMM TIGR03598.
   
   0.999
grpE
Co-chaperone GrpE; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01025.
 
 
 0.999
dnaK
Chaperone protein DnaK; Identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350.
 0.999
rplU
Ribosomal protein L21; Identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061.
   
 
 0.999
EGS37850.1
Identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090.
  
 
 0.999
rplK
Ribosomal protein L11; Identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632.
 
 
 0.999
rplM
Ribosomal protein L13; Identified by match to protein family HMM PF00572; match to protein family HMM TIGR01066.
  
 
 0.999
rplQ
Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059.
  
   0.999
rplO
Ribosomal protein L15; Identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071.
   
 
 0.999
rplN
Ribosomal protein L14; Identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067.
  
 
 0.999
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.