lepA protein (Lactobacillus oris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

lepA

GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393. (613 aa)

Predicted Functional Partners:

recA

0.999

ileS

0.999

rpsT

0.999

rpsO

0.999

EGS37928.1

0.999

rpsB

0.999

rpsN

0.999

rpsU

0.999

rplS

0.999

rpsP

0.999

Your Current Organism:

Lactobacillus oris

NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGS37928.1	lepA	HMPREF9102_0385	HMPREF9102_0469	Conserved domain protein.	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	0.999
EGS37928.1	rplS	HMPREF9102_0385	HMPREF9102_0802	Conserved domain protein.	Ribosomal protein L19; Identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024.	0.999
EGS37928.1	rpsB	HMPREF9102_0385	HMPREF9102_0443	Conserved domain protein.	Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011.	0.999
EGS37928.1	rpsN	HMPREF9102_0385	HMPREF9102_0478	Conserved domain protein.	Ribosomal protein S14p/S29e; Identified by match to protein family HMM PF00253.	0.999
EGS37928.1	rpsO	HMPREF9102_0385	HMPREF9102_0366	Conserved domain protein.	Ribosomal protein S15; Identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952.	0.999
EGS37928.1	rpsP	HMPREF9102_0385	HMPREF9102_0808	Conserved domain protein.	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002.	0.999
EGS37928.1	rpsT	HMPREF9102_0385	HMPREF9102_0365	Conserved domain protein.	Ribosomal protein S20; Identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029.	0.999
EGS37928.1	rpsU	HMPREF9102_0385	HMPREF9102_0509	Conserved domain protein.	Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030.	0.999
ileS	lepA	HMPREF9102_0322	HMPREF9102_0469	isoleucine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392.	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	0.999
ileS	recA	HMPREF9102_0322	HMPREF9102_0045	isoleucine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392.	RecA protein; Identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012.	0.999
ileS	rpsB	HMPREF9102_0322	HMPREF9102_0443	isoleucine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392.	Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011.	0.424
lepA	EGS37928.1	HMPREF9102_0469	HMPREF9102_0385	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	Conserved domain protein.	0.999
lepA	ileS	HMPREF9102_0469	HMPREF9102_0322	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	isoleucine--tRNA ligase; Identified by match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392.	0.999
lepA	recA	HMPREF9102_0469	HMPREF9102_0045	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	RecA protein; Identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012.	0.999
lepA	rplS	HMPREF9102_0469	HMPREF9102_0802	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	Ribosomal protein L19; Identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024.	0.999
lepA	rpsB	HMPREF9102_0469	HMPREF9102_0443	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011.	0.999
lepA	rpsN	HMPREF9102_0469	HMPREF9102_0478	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	Ribosomal protein S14p/S29e; Identified by match to protein family HMM PF00253.	0.999
lepA	rpsO	HMPREF9102_0469	HMPREF9102_0366	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	Ribosomal protein S15; Identified by match to protein family HMM PF00312; match to protein family HMM TIGR00952.	0.999
lepA	rpsP	HMPREF9102_0469	HMPREF9102_0808	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002.	0.999
lepA	rpsT	HMPREF9102_0469	HMPREF9102_0365	GTP-binding protein LepA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF06421; match to protein family HMM TIGR00231; match to protein family HMM TIGR01393.	Ribosomal protein S20; Identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029.	0.999

page 1 of 5

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About