STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38089.1Identified by match to protein family HMM PF06736. (217 aa)    
Predicted Functional Partners:
EGS38163.1
Hypothetical protein.
       0.536
EGS38008.1
Identified by match to protein family HMM PF00230.
       0.515
EGS37381.1
Identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076.
  
     0.494
EGS36489.1
Peptidase, M23 family; Identified by match to protein family HMM PF01551.
  
     0.462
EGS36468.1
Hypothetical protein.
  
     0.434
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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