STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38008.1Identified by match to protein family HMM PF00230. (234 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311.
 
 0.984
EGS36838.1
Identified by match to protein family HMM PF03009.
  
 0.748
dnaJ
Chaperone protein DnaJ; Identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349.
   
 
 0.635
fabHA
Beta-ketoacyl-acyl-carrier-protein synthase III; Identified by match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747.
   
  
 0.603
ndkA
Nucleoside pyrophosphate kinase; Identified by match to protein family HMM PF00334.
  
 
 0.599
rbsK
Ribokinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152.
  
 
 0.589
rbsK-2
Ribokinase; Identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152.
  
 
 0.589
adh
Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465.
  
 
 0.586
EGS37907.1
TrkA C-terminal domain protein; Identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254.
  
 
 0.560
EGS35906.1
Chloride transporter, ClC family; Identified by match to protein family HMM PF00654; match to protein family HMM PF02080.
  
 
 0.550
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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