STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS38147.1Dinuclear metal center protein, YbgI family; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486. (280 aa)    
Predicted Functional Partners:
EGS37917.1
Identified by match to protein family HMM PF04816.
  
 0.996
pepT
Identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01882.
  
    0.949
dnaG
DNA primase; Identified by match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391.
 
   
 0.864
rpoD
RNA polymerase sigma factor RpoD; Identified by match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04967; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937.
     
 0.853
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
  
    0.801
EGS37918.1
Putative aspartate transaminase; Identified by match to protein family HMM PF00155.
       0.535
metG
methionine--tRNA ligase; Identified by match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399.
  
  
 0.472
rffG
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181.
  
    0.449
glyQ
glycine--tRNA ligase, alpha subunit; Identified by match to protein family HMM PF02091; match to protein family HMM TIGR00388.
  
    0.449
era
Ribosome biogenesis GTPase Era; Identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436.
 
    0.443
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.