STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS39376.1Cysteine-rich domain protein; Identified by match to protein family HMM PF02754. (262 aa)    
Predicted Functional Partners:
EGS39501.1
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF02589; match to protein family HMM TIGR00273.
 
 0.999
EGS39560.1
Identified by match to protein family HMM PF02589.
 
 
 0.993
adh
Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465.
  
  
 0.633
ntd
Nucleoside deoxyribosyltransferase; Identified by match to protein family HMM PF05014.
       0.451
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Identified by match to protein family HMM PF01135; match to protein family HMM PF01209; match to protein family HMM PF02353; match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01934.
       0.440
EGS39561.1
Hypothetical protein.
       0.402
EGS39467.1
Putative lipoprotein; Identified by match to protein family HMM PF06028.
       0.402
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; Identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534.
   
  
 0.400
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.