STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS39559.1Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659. (262 aa)    
Predicted Functional Partners:
EGS39464.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
     0.936
budC-2
Diacetyl reductase ((R)-acetoin forming); Identified by match to protein family HMM PF00106; match to protein family HMM TIGR02415.
 
 
 0.622
EGS36989.1
Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF06458; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
 
     0.598
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
  
 
 0.577
EGS37480.1
Putative acetoacetyl-CoA reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
 
 
0.479
EGS36315.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.
 
 
0.474
EGS36946.1
Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF06458; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.465
budC
Diacetyl reductase ((R)-acetoin forming); Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR02415.
 
 
0.442
adh
Aldehyde-alcohol dehydrogenase 2; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465.
     
 0.433
EGS39420.1
Integrase core domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00665.
       0.430
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.