STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS39464.1Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (330 aa)    
Predicted Functional Partners:
EGS39559.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.
 
     0.936
EGS38766.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
 
 
 0.601
EGS36989.1
Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF06458; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
     0.539
EGS39387.1
Identified by match to protein family HMM PF02525.
  
    0.510
EGS35779.1
Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
      
 0.456
rpoA
DNA-directed RNA polymerase, alpha subunit; Identified by match to protein family HMM PF01000; match to protein family HMM PF01193; match to protein family HMM PF03118; match to protein family HMM TIGR02027.
    
 
 0.433
EGS39420.1
Integrase core domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00665.
       0.427
EGS36946.1
Gram-positive signal peptide protein, YSIRK family; Identified by match to protein family HMM PF00746; match to protein family HMM PF04650; match to protein family HMM PF06458; match to protein family HMM TIGR01167; match to protein family HMM TIGR01168.
  
    0.408
EGS39381.1
KxYKxGKxW signal domain protein; Identified by match to protein family HMM PF00746; match to protein family HMM PF06458; match to protein family HMM TIGR01167; match to protein family HMM TIGR03715.
       0.401
EGS39509.1
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047; match to protein family HMM PF03551.
  
  
 0.401
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.