STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS39395.1Transposase, IS116/IS110/IS902 family; Identified by match to protein family HMM PF02371. (367 aa)    
Predicted Functional Partners:
EGS39403.1
Putative nodulation ATP-binding protein I; Identified by match to protein family HMM PF00005.
       0.491
EGS39483.1
ABC transporter, permease protein, DrrB family; Identified by match to protein family HMM PF01061.
       0.491
EGS39537.1
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
       0.446
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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