Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EGS35971.1 | EGS37843.1 | HMPREF9102_1129 | HMPREF9102_0900 | Putative ComF operon protein 1; Identified by match to protein family HMM PF00271. | Primosomal protein DnaI; Identified by match to protein family HMM PF07319. | 0.459 |
| EGS35971.1 | EGS39516.1 | HMPREF9102_1129 | HMPREF9102_0761 | Putative ComF operon protein 1; Identified by match to protein family HMM PF00271. | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | 0.582 |
| EGS36802.1 | EGS39481.1 | HMPREF9102_1985 | HMPREF9102_0763 | Putative helicase-exonuclease AddAB, AddB subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Exonuclease DnaQ family/helicase DinG family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407. | 0.810 |
| EGS36802.1 | EGS39516.1 | HMPREF9102_1985 | HMPREF9102_0761 | Putative helicase-exonuclease AddAB, AddB subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | 0.634 |
| EGS36802.1 | EGS39541.1 | HMPREF9102_1985 | HMPREF9102_0762 | Putative helicase-exonuclease AddAB, AddB subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein. | 0.820 |
| EGS36802.1 | asnS | HMPREF9102_1985 | HMPREF9102_1914 | Putative helicase-exonuclease AddAB, AddB subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | asparagine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00457. | 0.418 |
| EGS37823.1 | EGS37843.1 | HMPREF9102_0901 | HMPREF9102_0900 | Replication initiation and membrane attachment protein, DnaB/DnaD family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07261. | Primosomal protein DnaI; Identified by match to protein family HMM PF07319. | 0.983 |
| EGS37823.1 | EGS38019.1 | HMPREF9102_0901 | HMPREF9102_0314 | Replication initiation and membrane attachment protein, DnaB/DnaD family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07261. | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | 0.756 |
| EGS37823.1 | EGS39481.1 | HMPREF9102_0901 | HMPREF9102_0763 | Replication initiation and membrane attachment protein, DnaB/DnaD family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07261. | Exonuclease DnaQ family/helicase DinG family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407. | 0.436 |
| EGS37823.1 | EGS39516.1 | HMPREF9102_0901 | HMPREF9102_0761 | Replication initiation and membrane attachment protein, DnaB/DnaD family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07261. | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | 0.807 |
| EGS37843.1 | EGS35971.1 | HMPREF9102_0900 | HMPREF9102_1129 | Primosomal protein DnaI; Identified by match to protein family HMM PF07319. | Putative ComF operon protein 1; Identified by match to protein family HMM PF00271. | 0.459 |
| EGS37843.1 | EGS37823.1 | HMPREF9102_0900 | HMPREF9102_0901 | Primosomal protein DnaI; Identified by match to protein family HMM PF07319. | Replication initiation and membrane attachment protein, DnaB/DnaD family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07261. | 0.983 |
| EGS37843.1 | EGS38019.1 | HMPREF9102_0900 | HMPREF9102_0314 | Primosomal protein DnaI; Identified by match to protein family HMM PF07319. | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | 0.526 |
| EGS37843.1 | EGS39481.1 | HMPREF9102_0900 | HMPREF9102_0763 | Primosomal protein DnaI; Identified by match to protein family HMM PF07319. | Exonuclease DnaQ family/helicase DinG family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407. | 0.598 |
| EGS37843.1 | EGS39516.1 | HMPREF9102_0900 | HMPREF9102_0761 | Primosomal protein DnaI; Identified by match to protein family HMM PF07319. | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | 0.868 |
| EGS38019.1 | EGS37823.1 | HMPREF9102_0314 | HMPREF9102_0901 | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | Replication initiation and membrane attachment protein, DnaB/DnaD family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07261. | 0.756 |
| EGS38019.1 | EGS37843.1 | HMPREF9102_0314 | HMPREF9102_0900 | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | Primosomal protein DnaI; Identified by match to protein family HMM PF07319. | 0.526 |
| EGS38019.1 | EGS39516.1 | HMPREF9102_0314 | HMPREF9102_0761 | Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478. | DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446. | 0.635 |
| EGS39481.1 | EGS36802.1 | HMPREF9102_0763 | HMPREF9102_1985 | Exonuclease DnaQ family/helicase DinG family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407. | Putative helicase-exonuclease AddAB, AddB subunit; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.810 |
| EGS39481.1 | EGS37823.1 | HMPREF9102_0763 | HMPREF9102_0901 | Exonuclease DnaQ family/helicase DinG family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407. | Replication initiation and membrane attachment protein, DnaB/DnaD family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07261. | 0.436 |
page 1 of 3