STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sraPSerine-rich adhesin, platelet-type; Identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167. (2428 aa)    
Predicted Functional Partners:
asp3
Accessory Sec system protein Asp3; Identified by match to protein family HMM TIGR03711.
 
   
 0.722
asp1
Accessory Sec system protein Asp1; Identified by match to protein family HMM TIGR03713.
 
   
 0.722
asp2
Accessory Sec system protein Asp2; Identified by match to protein family HMM TIGR03712.
 
   
 0.715
gtfA
Accessory Sec system glycosylation protein GtfA; Identified by match to protein family HMM PF00534; match to protein family HMM PF09318; match to protein family HMM TIGR02918.
 
     0.701
EGS36557.1
Hypothetical protein.
  
     0.631
EGS39468.1
Putative molybdenum cofactor biosynthesis protein C; Identified by match to protein family HMM TIGR01167.
 
   
0.551
EGS37861.1
Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
    0.467
EGS36558.1
Putative bacteriochlorophyll 4-vinyl reductase; Identified by match to protein family HMM PF01501.
  
     0.441
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064.
   
    0.428
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.