STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36538.1SecA cross-linking domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF01043; match to protein family HMM PF07517. (494 aa)    
Predicted Functional Partners:
EGS39479.1
SecA wing/scaffold domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF07516.
 
     0.976
secY2
Accessory Sec system translocase SecY2; Identified by match to protein family HMM PF00344; match to protein family HMM TIGR02920.
 
 
 0.940
asp1
Accessory Sec system protein Asp1; Identified by match to protein family HMM TIGR03713.
 
 
 
 0.882
asp3
Accessory Sec system protein Asp3; Identified by match to protein family HMM TIGR03711.
 
   
 0.865
asp2
Accessory Sec system protein Asp2; Identified by match to protein family HMM TIGR03712.
 
   
 0.858
secY
Preprotein translocase, SecY subunit; Identified by match to protein family HMM PF00344; match to protein family HMM TIGR00967.
 
 
 0.771
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
 
  
 0.745
ftsZ
Cell division protein FtsZ; Identified by match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065.
 
 
 0.671
secG
Preprotein translocase, SecG subunit; Identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810.
   
 0.638
secE
Preprotein translocase, SecE subunit; Identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964.
    
 0.632
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.