STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmDtRNA (guanine-N(1)-)-methyltransferase; Identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088. (252 aa)    
Predicted Functional Partners:
rplS
Ribosomal protein L19; Identified by match to protein family HMM PF01245; match to protein family HMM TIGR01024.
  
 0.999
rimM
16S rRNA processing protein RimM; Identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273.
 
  
 0.998
rpsP
Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002.
 
  
 0.997
rplB
Ribosomal protein L2; Identified by match to protein family HMM PF00181; match to protein family HMM PF03947; match to protein family HMM TIGR01171.
 
    0.951
rpsD
Ribosomal protein S4; Identified by match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017.
 
  
 0.948
nusA
Transcription termination factor NusA; Identified by match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953.
 
  
 0.942
rplD
50S ribosomal protein L4; Identified by match to protein family HMM PF00573; match to protein family HMM TIGR03953.
  
    0.941
rpsF
Ribosomal protein S6; Identified by match to protein family HMM PF01250; match to protein family HMM TIGR00166.
  
  
 0.938
rpsJ
Ribosomal protein S10; Identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049.
  
    0.934
rplW
Ribosomal protein L23; Identified by match to protein family HMM PF00276.
  
    0.933
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.