STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmkGuanylate kinase; Identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263. (206 aa)    
Predicted Functional Partners:
rpoZ
DNA-directed RNA polymerase, omega subunit; Identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690.
  
  
 0.977
sun
Ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563.
 
 
 0.919
fmt
methionyl-tRNA formyltransferase; Identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460.
  
  
 0.904
rpe
Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163.
 
 
 0.896
coaBC
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; Identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521.
    
 0.891
EGS36547.1
Putative serine/threonine-protein kinase PrkC; Identified by match to protein family HMM PF00069; match to protein family HMM PF03793.
     0.882
priA
Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM TIGR00595.
  
    0.878
EGS36534.1
Putative serine/threonine phosphatase stp; Identified by match to protein family HMM PF00481; match to protein family HMM PF07228.
   
   0.876
rsgA
Ribosome small subunit-dependent GTPase A; Identified by match to protein family HMM PF03193; match to protein family HMM TIGR00157.
     
 0.869
EGS36542.1
Thiamine diphosphokinase; Identified by match to protein family HMM PF04263; match to protein family HMM TIGR01378.
 
     0.850
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.