STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36536.1Hypothetical protein. (214 aa)    
Predicted Functional Partners:
EGS37309.1
Putative CoA-substrate-specific enzyme activase; Identified by match to protein family HMM PF01869; match to protein family HMM TIGR00241.
     
 0.712
EGS35950.1
Hypothetical protein.
  
     0.692
EGS37880.1
Hypothetical protein.
  
     0.642
rplU
Ribosomal protein L21; Identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061.
       0.499
EGS38129.1
Hypothetical protein.
  
     0.484
EGS35977.1
Hypothetical protein.
  
     0.479
EGS36981.1
YhgE/Pip C-terminal domain protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062.
 
  
 0.477
EGS38143.1
Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
     0.465
EGS37334.1
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.448
EGS36940.1
Putative molybdenum cofactor biosynthesis protein C; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
 
 
 
 0.430
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.