STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36592.1Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717. (695 aa)    
Predicted Functional Partners:
EGS35797.1
Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098.
 
 0.925
EGS36617.1
Bacterial membrane protein YfhO; Identified by match to protein family HMM PF09586.
 
     0.890
mreC
Rod shape-determining protein MreC; Identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219.
 
 
 0.883
EGS38019.1
Cell division protein FtsQ; Identified by match to protein family HMM PF03799; match to protein family HMM PF08478.
 
 0.880
EGS39486.1
Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.
 
 
 
 0.861
EGS38094.1
Putative stage V sporulation protein E; Identified by match to protein family HMM PF01098.
 
 0.840
EGS36623.1
Peptidase, S54 family; Identified by match to protein family HMM PF01694.
 
   
 0.824
murC
UDP-N-acetylmuramate--L-alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082.
 
 
 0.793
gpsB
Cell cycle protein GpsB; Identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544.
 
  
 0.777
EGS36567.1
5-formyltetrahydrofolate cyclo-ligase; Identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727.
  
  
 0.768
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.