STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS37828.1Thioredoxin; Identified by match to protein family HMM PF00085. (106 aa)    
Predicted Functional Partners:
ahpC
Peroxiredoxin; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR03137.
  
 0.990
EGS35859.1
Ribonucleoside-diphosphate reductase, alpha subunit; Identified by match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF08343; match to protein family HMM TIGR02506.
  
 
 0.940
EGS37844.1
tRNA binding domain protein; Identified by match to protein family HMM PF01588.
       0.862
murC
UDP-N-acetylmuramate--L-alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082.
     
 0.850
polA
DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
   
 
 0.838
dnaK
Chaperone protein DnaK; Identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350.
  
 0.781
msrB
methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357.
   
 0.762
EGS37995.1
Putative thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992.
  
 
 0.712
EGS37423.1
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; Identified by match to protein family HMM PF00160.
  
 0.703
dnaJ
Chaperone protein DnaJ; Identified by match to protein family HMM PF00226; match to protein family HMM PF00684; match to protein family HMM PF01556; match to protein family HMM TIGR02349.
   
 0.702
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.