sbcD-2 protein (Lactobacillus oris) - STRING interaction network

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

sbcD-2

Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149. (409 aa)

Predicted Functional Partners:

EGS36107.1

0.986

polA

0.985

EGS38081.1

0.955

EGS35897.1

0.904

EGS35779.1

0.858

EGS39481.1

0.717

recA

0.591

budC

0.586

EGS37322.1

0.586

EGS37480.1

0.586

Your Current Organism:

Lactobacillus oris

NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGS35779.1	EGS35897.1	HMPREF9102_0925	HMPREF9102_0924	Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Identified by match to protein family HMM PF06133.	0.894
EGS35779.1	EGS36107.1	HMPREF9102_0925	HMPREF9102_0922	Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Hypothetical protein.	0.858
EGS35779.1	sbcD-2	HMPREF9102_0925	HMPREF9102_0923	Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149.	0.858
EGS35897.1	EGS35779.1	HMPREF9102_0924	HMPREF9102_0925	Identified by match to protein family HMM PF06133.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	0.894
EGS35897.1	EGS36107.1	HMPREF9102_0924	HMPREF9102_0922	Identified by match to protein family HMM PF06133.	Hypothetical protein.	0.904
EGS35897.1	sbcD-2	HMPREF9102_0924	HMPREF9102_0923	Identified by match to protein family HMM PF06133.	Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149.	0.904
EGS36107.1	EGS35779.1	HMPREF9102_0922	HMPREF9102_0925	Hypothetical protein.	Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074.	0.858
EGS36107.1	EGS35897.1	HMPREF9102_0922	HMPREF9102_0924	Hypothetical protein.	Identified by match to protein family HMM PF06133.	0.904
EGS36107.1	sbcD-2	HMPREF9102_0922	HMPREF9102_0923	Hypothetical protein.	Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149.	0.986
EGS37322.1	EGS37480.1	HMPREF9102_1413	HMPREF9102_1449	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.	Putative acetoacetyl-CoA reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.	0.414
EGS37322.1	polA	HMPREF9102_1413	HMPREF9102_0905	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.	DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.613
EGS37322.1	sbcD-2	HMPREF9102_1413	HMPREF9102_0923	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.	Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149.	0.586
EGS37480.1	EGS37322.1	HMPREF9102_1449	HMPREF9102_1413	Putative acetoacetyl-CoA reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.	Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.	0.414
EGS37480.1	polA	HMPREF9102_1449	HMPREF9102_0905	Putative acetoacetyl-CoA reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.	DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.613
EGS37480.1	sbcD-2	HMPREF9102_1449	HMPREF9102_0923	Putative acetoacetyl-CoA reductase; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659.	Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149.	0.586
EGS38081.1	EGS39481.1	HMPREF9102_0453	HMPREF9102_0763	Exonuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	Exonuclease DnaQ family/helicase DinG family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407.	0.525
EGS38081.1	polA	HMPREF9102_0453	HMPREF9102_0905	Exonuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	DNA-directed DNA polymerase; Identified by match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.	0.983
EGS38081.1	recA	HMPREF9102_0453	HMPREF9102_0045	Exonuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	RecA protein; Identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012.	0.684
EGS38081.1	sbcD-2	HMPREF9102_0453	HMPREF9102_0923	Exonuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149.	0.955
EGS39481.1	EGS38081.1	HMPREF9102_0763	HMPREF9102_0453	Exonuclease DnaQ family/helicase DinG family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01407.	Exonuclease SbcCD, C subunit; Identified by match to protein family HMM PF02463.	0.525