STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS35779.1Penicillin-binding protein, 1A family; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074. (720 aa)    
Predicted Functional Partners:
EGS35897.1
Identified by match to protein family HMM PF06133.
       0.894
EGS36107.1
Hypothetical protein.
       0.858
sbcD-2
Exonuclease SbcCD, D subunit; Identified by match to protein family HMM PF00149.
       0.858
EGS37966.1
Negative regulator of genetic competence (MecA); Identified by match to protein family HMM PF05389.
  
   
 0.826
murG
Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Identified by match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133.
 
  
 0.803
EGS37998.1
Putative penicillin-binding protein 2B; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793.
 
 
0.778
EGS35797.1
Cell cycle protein, FtsW/RodA/SpoVE family; Identified by match to protein family HMM PF01098.
 
 
 
 0.765
EGS38094.1
Putative stage V sporulation protein E; Identified by match to protein family HMM PF01098.
 
 
 
 0.712
EGS36592.1
Penicillin-binding protein, transpeptidase domain protein; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717.
 
 
 
 0.685
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143.
  
   
 0.666
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.