STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36037.1Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616. (323 aa)    
Predicted Functional Partners:
lacY
Galactoside permease; Identified by match to protein family HMM PF01306; match to protein family HMM PF07690; match to protein family HMM TIGR00882.
 
  
 0.973
EGS35928.1
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
 
     0.817
abfA
alpha-N-arabinofuranosidase 1; Identified by match to protein family HMM PF06964.
 
   
 0.730
EGS35961.1
Hypothetical protein; Identified by glimmer; putative.
       0.522
araA
L-arabinose isomerase; Identified by match to protein family HMM PF02610.
 
  
 0.500
EGS35996.1
Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782.
  
  
 0.490
EGS35772.1
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616.
 
   
 0.422
araD_1
L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596.
     
 0.401
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.