STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uppUracil phosphoribosyltransferase; Identified by match to protein family HMM PF00156; match to protein family HMM TIGR01091. (211 aa)    
Predicted Functional Partners:
pheS
phenylalanine--tRNA ligase, alpha subunit; Identified by match to protein family HMM PF01409; match to protein family HMM PF02912; match to protein family HMM TIGR00468.
  
  
 0.999
udk
Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235.
 
 
 0.967
EGS38597.1
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Identified by match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM PF06508; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888.
  
  
 0.962
pyrH
UMP kinase; Identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075.
   
 
 0.958
tdk
Thymidine kinase; Identified by match to protein family HMM PF00265.
     
 0.927
pyrR-2
Pyrimidine operon regulatory protein/uracil phosphoribosyltransferase PyrR; Identified by match to protein family HMM PF00156.
     
 0.915
EGS35773.1
Identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057.
       0.886
prmC
protein-(glutamine-N5) methyltransferase, release factor-specific; Identified by match to protein family HMM PF05175; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534.
       0.886
prfA
Peptide chain release factor 1; Identified by match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019.
       0.886
thyA
Thymidylate synthase; Identified by match to protein family HMM PF00303; match to protein family HMM TIGR03284.
     
 0.811
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.