STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS35853.1Beta-lactamase; Identified by match to protein family HMM PF00144. (340 aa)    
Predicted Functional Partners:
EGS36055.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
     
 0.682
EGS35767.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
     
 0.586
EGS39506.1
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
     0.508
cbg
Beta-glucosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
  
  
 0.507
EGS35799.1
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
     
 0.486
EGS35878.1
Arginine repressor, C-terminal domain protein; Identified by match to protein family HMM PF01316; match to protein family HMM PF02863.
       0.482
EGS38068.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
 
     0.415
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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