EGS35799.1 protein (Lactobacillus oris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EGS35799.1

Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047. (157 aa)

Predicted Functional Partners:

EGS35767.1

0.801

EGS36055.1

0.801

EGS35853.1

0.486

EGS35924.1

0.481

EGS36321.1

0.450

Your Current Organism:

Lactobacillus oris

NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGS35767.1	EGS35799.1	HMPREF9102_1004	HMPREF9102_1006	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.801
EGS35767.1	EGS35853.1	HMPREF9102_1004	HMPREF9102_1003	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Beta-lactamase; Identified by match to protein family HMM PF00144.	0.586
EGS35767.1	EGS35924.1	HMPREF9102_1004	HMPREF9102_1007	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Putative lipoprotein.	0.481
EGS35767.1	EGS36055.1	HMPREF9102_1004	HMPREF9102_1005	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.958
EGS35799.1	EGS35767.1	HMPREF9102_1006	HMPREF9102_1004	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.801
EGS35799.1	EGS35853.1	HMPREF9102_1006	HMPREF9102_1003	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	Beta-lactamase; Identified by match to protein family HMM PF00144.	0.486
EGS35799.1	EGS35924.1	HMPREF9102_1006	HMPREF9102_1007	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	Putative lipoprotein.	0.481
EGS35799.1	EGS36055.1	HMPREF9102_1006	HMPREF9102_1005	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.801
EGS35799.1	EGS36321.1	HMPREF9102_1006	HMPREF9102_2116	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.	0.450
EGS35853.1	EGS35767.1	HMPREF9102_1003	HMPREF9102_1004	Beta-lactamase; Identified by match to protein family HMM PF00144.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.586
EGS35853.1	EGS35799.1	HMPREF9102_1003	HMPREF9102_1006	Beta-lactamase; Identified by match to protein family HMM PF00144.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.486
EGS35853.1	EGS36055.1	HMPREF9102_1003	HMPREF9102_1005	Beta-lactamase; Identified by match to protein family HMM PF00144.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.682
EGS35924.1	EGS35767.1	HMPREF9102_1007	HMPREF9102_1004	Putative lipoprotein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.481
EGS35924.1	EGS35799.1	HMPREF9102_1007	HMPREF9102_1006	Putative lipoprotein.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.481
EGS35924.1	EGS36055.1	HMPREF9102_1007	HMPREF9102_1005	Putative lipoprotein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.481
EGS36055.1	EGS35767.1	HMPREF9102_1005	HMPREF9102_1004	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.958
EGS36055.1	EGS35799.1	HMPREF9102_1005	HMPREF9102_1006	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.801
EGS36055.1	EGS35853.1	HMPREF9102_1005	HMPREF9102_1003	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Beta-lactamase; Identified by match to protein family HMM PF00144.	0.682
EGS36055.1	EGS35924.1	HMPREF9102_1005	HMPREF9102_1007	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Putative lipoprotein.	0.481
EGS36321.1	EGS35799.1	HMPREF9102_2116	HMPREF9102_1006	biotin--[acetyl-CoA-carboxylase] ligase; Identified by match to protein family HMM PF03099; match to protein family HMM TIGR00121.	Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.	0.450