STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS36054.1ROK family protein; Identified by match to protein family HMM PF00480. (389 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Identified by match to protein family HMM PF01261; match to protein family HMM TIGR02630.
 
   
 0.690
xylB
Xylulokinase; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01312.
 
  
 0.617
EGS35899.1
Glycosyl hydrolase, family 31; Identified by match to protein family HMM PF01055.
  
  
 0.548
EGS36104.1
ROK family protein; Identified by match to protein family HMM PF00480.
 
     0.495
glk
Glucokinase; Identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744.
 
     0.490
EGS35972.1
Transporter, major facilitator family protein; Identified by match to protein family HMM PF07690.
 
     0.475
EGS37421.1
ROK family protein; Identified by match to protein family HMM PF00480.
 
     0.427
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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