STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGS35912.1RNase3 domain protein; Identified by match to protein family HMM PF00636. (137 aa)    
Predicted Functional Partners:
cysS
cysteine--tRNA ligase; Identified by match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435.
  
  
 0.986
EGS36052.1
RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186.
 
  
 0.982
gltX
glutamate--tRNA ligase; Identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464.
     
 0.825
EGS38004.1
S4 domain protein; Identified by match to protein family HMM PF01479.
  
   
 0.745
EGS39400.1
Fibronectin-binding protein A, N-terminal domain protein; Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.
 
     0.681
EGS38992.1
Identified by match to protein family HMM PF06135.
  
     0.669
polC
DNA polymerase III, alpha subunit, Gram-positive type; Identified by match to protein family HMM PF00929; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00573; match to protein family HMM TIGR01405.
  
    0.661
EGS37917.1
Identified by match to protein family HMM PF04816.
  
     0.633
sepF
Cell division protein SepF; Identified by match to protein family HMM PF04472.
  
    0.615
EGS36570.1
Helix-turn-helix protein, YlxM/p13 family; Identified by match to protein family HMM PF04297.
  
     0.608
Your Current Organism:
Lactobacillus oris
NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.