pepC protein (Lactobacillus oris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Experiments

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[Homology]

Score

pepC

Identified by match to protein family HMM PF03051. (446 aa)

Predicted Functional Partners:

EGS36986.1

0.941

nusA

0.873

rpsG

0.797

pepO

0.789

tsf

0.731

dut

0.675

rplA

0.581

radA

0.578

EGS36006.1

0.537

map

0.533

Your Current Organism:

Lactobacillus oris

NCBI taxonomy Id: 944562
Other names: L. oris F0423, Lactobacillus oris F0423, Lactobacillus oris str. F0423, Lactobacillus oris strain F0423

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGS36006.1	EGS36986.1	HMPREF9102_0921	HMPREF9102_1694	Putative foldase protein PrsA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00639.	Putative Xaa-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM PF09168.	0.583
EGS36006.1	map	HMPREF9102_0921	HMPREF9102_0180	Putative foldase protein PrsA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00639.	Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.	0.513
EGS36006.1	nusA	HMPREF9102_0921	HMPREF9102_0456	Putative foldase protein PrsA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00639.	Transcription termination factor NusA; Identified by match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953.	0.927
EGS36006.1	pepC	HMPREF9102_0921	HMPREF9102_1194	Putative foldase protein PrsA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00639.	Identified by match to protein family HMM PF03051.	0.537
EGS36006.1	rplA	HMPREF9102_0921	HMPREF9102_1181	Putative foldase protein PrsA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00639.	Ribosomal protein L1; Identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169.	0.840
EGS36986.1	EGS36006.1	HMPREF9102_1694	HMPREF9102_0921	Putative Xaa-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM PF09168.	Putative foldase protein PrsA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00639.	0.583
EGS36986.1	map	HMPREF9102_1694	HMPREF9102_0180	Putative Xaa-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM PF09168.	Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.	0.808
EGS36986.1	pepC	HMPREF9102_1694	HMPREF9102_1194	Putative Xaa-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM PF09168.	Identified by match to protein family HMM PF03051.	0.941
EGS36986.1	pepO	HMPREF9102_1694	HMPREF9102_1820	Putative Xaa-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM PF09168.	Neprilysin; Identified by match to protein family HMM PF01431; match to protein family HMM PF05649.	0.999
dut	pepC	HMPREF9102_1191	HMPREF9102_1194	dUTP diphosphatase; Identified by match to protein family HMM PF00692.	Identified by match to protein family HMM PF03051.	0.675
dut	radA	HMPREF9102_1191	HMPREF9102_1190	dUTP diphosphatase; Identified by match to protein family HMM PF00692.	DNA repair protein RadA; Identified by match to protein family HMM TIGR00416.	0.954
map	EGS36006.1	HMPREF9102_0180	HMPREF9102_0921	Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.	Putative foldase protein PrsA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00639.	0.513
map	EGS36986.1	HMPREF9102_0180	HMPREF9102_1694	Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.	Putative Xaa-Pro dipeptidyl-peptidase; Identified by match to protein family HMM PF02129; match to protein family HMM PF08530; match to protein family HMM PF09168.	0.808
map	pepC	HMPREF9102_0180	HMPREF9102_1194	Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.	Identified by match to protein family HMM PF03051.	0.533
map	pepO	HMPREF9102_0180	HMPREF9102_1820	Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.	Neprilysin; Identified by match to protein family HMM PF01431; match to protein family HMM PF05649.	0.589
map	rplA	HMPREF9102_0180	HMPREF9102_1181	Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.	Ribosomal protein L1; Identified by match to protein family HMM PF00687; match to protein family HMM TIGR01169.	0.697
map	rpsG	HMPREF9102_0180	HMPREF9102_1290	Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.	Ribosomal protein S7; Identified by match to protein family HMM PF00177; match to protein family HMM TIGR01029.	0.961
map	tsf	HMPREF9102_0180	HMPREF9102_0444	Methionine aminopeptidase, type I; Identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500.	Translation elongation factor Ts; Identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116.	0.838
nusA	EGS36006.1	HMPREF9102_0456	HMPREF9102_0921	Transcription termination factor NusA; Identified by match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953.	Putative foldase protein PrsA; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF00639.	0.927
nusA	pepC	HMPREF9102_0456	HMPREF9102_1194	Transcription termination factor NusA; Identified by match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953.	Identified by match to protein family HMM PF03051.	0.873